Exploring the cell information vs gene expression on reduced dimensions
In this tab, users can visualise both cell information and gene
expression side-by-side on low-dimensional representions.
Subsetting cells
Select all groups
Deselect all groups
Select all groups
Deselect all groups
General graphics controls
Gene Expression in Each Condition
Cell information / gene expression violin plot / box plot
In this tab, users can visualise the gene expression or continuous cell information
across groups of cells (e.g. condition / cell types).
Subsetting cells
Select all groups
Deselect all groups
Select all groups
Deselect all groups
Toggle graphics controls
Multiple gene expressions bubbleplot / heatmap
In this tab, users can visualise the gene expression patterns of
multiple genes grouped by categorical cell information (e.g. condition / cell types).
The normalised expression are averaged, log-transformed and then plotted.
List of gene names
Subsetting cells
Select all groups
Deselect all groups
Select all groups
Deselect all groups
Toggle graphics controls
This tool was built on
ShinyCell